PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.013870.4
Common NameCsa_5G353650, LOC101213142
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 296aa    MW: 31215.7 Da    PI: 6.9181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.013870.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-101255445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     W+ e d+ + +a + ++ +   +W++Ia  ++ g+t +++k+++ 
   Cucsa.013870.4 12 WSLEQDKAFENALASHPEDdsdRWEKIAVDVP-GKTIEEIKHHYE 55
                     ********************************.**********96 PP

2Myb_DNA-binding422.2e-13122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   Cucsa.013870.4 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.6E-8860IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-101066IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-41155IPR009057Homeodomain-like
CDDcd001671.86E-81258No hitNo description
PROSITE profilePS500906.5971258IPR017877Myb-like domain
PfamPF002492.0E-81255IPR001005SANT/Myb domain
PROSITE profilePS5129417.581114171IPR017930Myb domain
SuperFamilySSF466891.27E-16117172IPR009057Homeodomain-like
SMARTSM007173.2E-10119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.6E-17119169IPR006447Myb domain, plants
PfamPF002492.7E-11122166IPR001005SANT/Myb domain
CDDcd001678.38E-10122167No hitNo description
Gene3DG3DSA:1.10.10.601.4E-10122165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTVDEAGSSS LWSLEQDKAF ENALASHPED DSDRWEKIAV DVPGKTIEEI KHHYELLVED  60
VNLIESGCVP LPSYSSSSDG SANHAGDEGT TKKNGHFGNC NGDSNHGSKT SRSDQERRKG  120
IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKERRRS  180
SIHDITSVAN GDISAAQGPI TGQANGSGAA PSGKPTKQPP QSAAGPPGVG MYGGPTMGQP  240
VGGPLVSAVG TPVSLPAPAH MAYGVRAPVP GTVVPGAPVN MGPMTYPMPP TSAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-19777676RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149865.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011655162.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011655163.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011655164.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011655165.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011655166.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-61DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0A0KTA80.0A0A0A0KTA8_CUCSA; Uncharacterized protein
STRINGGLYMA07G28310.11e-171(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-114MYB family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]